Scaffold JGI25926J51410_1004260

Overview

Basic Information

• Taxon OID: 3300003490
• Scaffold ID: JGI25926J51410_1004260
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MM110.SN
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2967
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (12.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F053134	Metagenome / Metatranscriptome	141	Y
F080798	Metagenome	114	N
F088153	Metagenome / Metatranscriptome	109	N

Sequences

Protein ID	Family	RBS	Sequence
JGI25926J51410_10042603	F053134	N/A	MKTTILGLLAAVAATIQTTVQDGHSLDDWKTWILPVSLAVLGYLSNDQPTTKS*
JGI25926J51410_10042604	F088153	N/A	MTIPTEWILTVLIALATVISTLAAIIYRQLAAEIATLRTIVAKLQEDVDRLSKGCGIGACLYKNRNR*
JGI25926J51410_10042605	F080798	N/A	MPTPHTTAATIAEIISSVPNFVVSQMKRAYELANTPDQQQXILDAMPDFGVTPTXALTLYATMQTALASIGLAGNLPVADLTIFQPQPDGSVLYVAPPEPEPTPDL*