NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI25926J51410_1003551

Scaffold JGI25926J51410_1003551


Overview

Basic Information
Taxon OID3300003490 Open in IMG/M
Scaffold IDJGI25926J51410_1003551 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MM110.SN
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3218
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (50.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameLake Michigan, USA
CoordinatesLat. (o)43.1998Long. (o)-86.5698Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002044Metagenome / Metatranscriptome599Y
F002162Metagenome / Metatranscriptome588Y
F004599Metagenome / Metatranscriptome431N
F007469Metagenome / Metatranscriptome350Y
F042333Metagenome158Y

Sequences

Protein IDFamilyRBSSequence
JGI25926J51410_10035511F042333GAGMDGYDTADGFRVYQCLKCCAVGTKNLAEATDTQEPVIRCDKCGSWQFVDHQCHTCLLIGA
JGI25926J51410_10035512F002162N/AMPNYDYICDREGSSIVLDLPMQHEIPLCQVCGFELTRVFTAVPAIFKGTGWAGKGG*
JGI25926J51410_10035513F007469AGGAGGMGEMIMIDGSGLTATFTDNGVRVEPSTVVCDACNDDRLLHEGDLLRCYSCHAINLIP*
JGI25926J51410_10035514F004599GGAGGMAFNLADYEDVATLNKWFIQNFPQGRSDISVISHDAVNGYILVQATLWRDSKDQQPCVSNIAFGARESYIQNMKKFYVEDTATSALGRAIILLKGSDKTATKDDMRKVESEPIKNIYGKSGNSQVIEMALRKSFADDAKPASEPTTWSVGDIAEALSSKPKQQECIHGLMILKEGTAKTGKPYYGYVCSAPKGEQCDAKWAVTAANGSWFFREED*
JGI25926J51410_10035518F002044N/AMANTRKSSKRKKINRRIVRRSPEPLTKMDQHYLALHTCYTAARKAGFTPEHAFWLMTEVKTFPNWIVGDGGIIPSIDPTDDEDND*
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