Scaffold JGI25926J51410_1003523

Overview

Basic Information

• Taxon OID: 3300003490
• Scaffold ID: JGI25926J51410_1003523
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MM110.SN
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3228
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (72.73%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005558	Metagenome	396	Y
F018135	Metagenome	236	Y
F055552	Metagenome	138	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI25926J51410_10035235	F018135	N/A	MTIERVRHSGAIVISDFTGEGAGEYLFTRTYYGYTIKQAKQLFKIAIAGEDK*
JGI25926J51410_10035238	F005558	GGAGG	MPTNMKDDSISWAELAELTHATQVERFDWCPCEDADGMETVYPDCPSREEE*
JGI25926J51410_10035239	F055552	GAGG	MNKEYWQRKADLCQKIGIEQLMEGDIKNGTRNLKRMVRAMEEVNLIKANEGEDKSAADMWADLIASGVMLTSEGENND*