Scaffold JGI25926J51410_1003419

Overview

Basic Information

• Taxon OID: 3300003490
• Scaffold ID: JGI25926J51410_1003419
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MM110.SN
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3276
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (100.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007525	Metagenome / Metatranscriptome	349	Y
F008496	Metagenome / Metatranscriptome	332	Y
F016662	Metagenome / Metatranscriptome	245	Y
F030094	Metagenome / Metatranscriptome	186	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI25926J51410_100341911	F008496	AGGAG	VDYPIPATVTEYKPEYDPKATIVVRKGYYYGTPSDSKFDVENADDISRTYWRLDAVTETNNRNSRAIDKLKDYLVENFDEIGEEHATEIANIFGIDLSKEVEVEFTVTIKATISMPVNEEVSDLSVYDFDITLESNESKYEVQEFDADIDSIDERY*
JGI25926J51410_10034193	F007525	AGGA	MKTYEGVTVEYKEVIPTSKQMPEFYVWQEGYESYATIKYEDRVVEVERGGEMHLTLPNLVNGELSDEGATVVRYSDDLEAAGINDDIQFMQYLKTISNAGFEVYRMNPWWEVFSHNEDMGEVYDTFYEAIDCGIDYILDDRNW*
JGI25926J51410_10034197	F030094	GGAG	MKLRGIFEGTFESVWSMEVPQTEWESFLRHHPDFDENDRDDIQEMWNHFKELGCYDEIDDTVXTDVIMTGIETYGVEVEIN*
JGI25926J51410_10034198	F016662	GGAG	MTYLVATTEVIYDEQDLIKMMLATGEYGIHGHPISHEAMVEFVKDQEWQIEHHLFLDKFDVPAQISIKDEDGTDLFFAKNKLEIK*