Scaffold JGI25926J51410_1003373

Overview

Basic Information

• Taxon OID: 3300003490
• Scaffold ID: JGI25926J51410_1003373
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MM110.SN
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3301
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (76.92%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001477	Metagenome / Metatranscriptome	687	Y
F003212	Metagenome / Metatranscriptome	500	Y
F003863	Metagenome	464	Y
F011484	Metagenome	290	Y
F018135	Metagenome	236	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI25926J51410_100337310	F001477	AGGAGG	VSNLYTIHPPKSDLILFYEVVEPGGENTWGGASCIEAIQWLFLAPTGSRLLISAWDSDEEDAHLVGQSIDVTDLIQQAREVGL*
JGI25926J51410_100337312	F003863	GGAGG	MESKEVSGKQSIHYRNYRRARDKALVRLAHLYPDTYKQLLDEQRSFDEQEGKSWIINPDSRLTIAVHTRANAVPDVAGRTDYDSSDEGYNGGEA*
JGI25926J51410_10033734	F018135	AGG	MTVERVANSGAYVLSALAGEGAGEYLFTRTYYGYTLKQAKAQFKIAIEGEVA*
JGI25926J51410_10033736	F011484	AGGAGG	MKELEQFLNVEAEWVLERLSTGTESNDRNYYQGRLDQLAQVRRLLNLPQIMRESVA*
JGI25926J51410_10033738	F003212	N/A	MKDKWLVTIEIDTYDGDPKSWNWDTLYIGEETVKIIETQWKGRVLPTNEGESNE*