Scaffold JGI25926J51410

Basic Information
Taxon OID	3300003490 Open in IMG/M
Scaffold ID	JGI25926J51410_1003007 Open in IMG/M
Source Dataset Name	Freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MM110.SN
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300003490 Open in IMG/M

Scaffold ID

JGI25926J51410_1003007 Open in IMG/M

Source Dataset Name

Freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MM110.SN

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	3455
Total Scaffold Genes	11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (45.45%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (50.00%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

3455

Total Scaffold Genes

11 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

5 (45.45%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (50.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Taxonomy

All Organisms → Viruses → Predicted Viral

(Source: DeepVirFinder)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Michigan, USA
Coordinates	Lat. (^o)	43.1998	Long. (^o)	-86.5698	Alt. (m)	Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

Lake Michigan, USA

Coordinates

Lat. (^o)

43.1998

Long. (^o)

-86.5698

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014710	Metagenome / Metatranscriptome	260	Y
F026209	Metagenome / Metatranscriptome	198	Y
F036073	Metagenome / Metatranscriptome	170	Y
F076813	Metagenome / Metatranscriptome	117	Y
F080837	Metagenome / Metatranscriptome	114	N
F102437	Metagenome / Metatranscriptome	101	N

Sequences

Protein ID	Family	RBS	Sequence
JGI25926J51410_10030071	F080837	N/A	MTTQVLKPYLKEAKRVGYTVSGSVKDGFIAVVTDACEQHPAGEVVMRGVKKPGVNVWIMGFNTLYWQEPTIAECLAESKWYAEMQGASK*
JGI25926J51410_10030073	F026209	N/A	MCMMKNRTVTNEIYDEDVCGGEWRQVTVPAIGGIKWHKREQLGDQKQSAYYDHSFYKVPFYGPYDQGRIHKALSKLYPARFNKFGGYTTVSTVEQLDAEHIKVEMCYHIGD*
JGI25926J51410_10030074	F102437	AGGAG	MTSKLRAFEDTVLSVREPRELKGSLICSIQDSDIPTLDKRKLIIAIDRCNTINDLQRLFYNALLKFEGQGVI*
JGI25926J51410_10030076	F036073	AGGAG	MSETIEQTKPYDADLHCKKIAWMVKNSPDWDYEKQTLEEYLETVPEYPTDEQVKDFNHLYVEPFVPFKKEKPYQGDQVNEAS*
JGI25926J51410_10030077	F076813	AGGAG	MKHHNHFDQNGDIRDIFAAMAMQSLMKQDAATPKWVAHQAYKYADAMLEVREEVSHNEEIK*
JGI25926J51410_10030079	F014710	N/A	MYGMMTTMTEYKTIPTQFKKKGFTYTQLKREGKRAIFQQTREDSSLNNYEVVKIGRHNGYLMGGVMIEPSETYPGSSLWGITAWTCSSIDAAMQRYDTLPS*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold JGI25926J51410_1003007

Overview

Ecosystem & Geography

Associated Families

Sequences