Basic Information | |
---|---|
Taxon OID | 3300003490 Open in IMG/M |
Scaffold ID | JGI25926J51410_1003007 Open in IMG/M |
Source Dataset Name | Freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MM110.SN |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 3455 |
Total Scaffold Genes | 11 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 5 (45.45%) |
Novel Protein Genes | 6 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (50.00%) |
Associated Families | 6 |
Taxonomy | |
---|---|
All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
Source Dataset Ecosystem |
---|
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | Lake Michigan, USA | |||||||
Coordinates | Lat. (o) | 43.1998 | Long. (o) | -86.5698 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F014710 | Metagenome / Metatranscriptome | 260 | Y |
F026209 | Metagenome / Metatranscriptome | 198 | Y |
F036073 | Metagenome / Metatranscriptome | 170 | Y |
F076813 | Metagenome / Metatranscriptome | 117 | Y |
F080837 | Metagenome / Metatranscriptome | 114 | N |
F102437 | Metagenome / Metatranscriptome | 101 | N |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
JGI25926J51410_10030071 | F080837 | N/A | MTTQVLKPYLKEAKRVGYTVSGSVKDGFIAVVTDACEQHPAGEVVMRGVKKPGVNVWIMGFNTLYWQEPTIAECLAESKWYAEMQGASK* |
JGI25926J51410_10030073 | F026209 | N/A | MCMMKNRTVTNEIYDEDVCGGEWRQVTVPAIGGIKWHKREQLGDQKQSAYYDHSFYKVPFYGPYDQGRIHKALSKLYPARFNKFGGYTTVSTVEQLDAEHIKVEMCYHIGD* |
JGI25926J51410_10030074 | F102437 | AGGAG | MTSKLRAFEDTVLSVREPRELKGSLICSIQDSDIPTLDKRKLIIAIDRCNTINDLQRLFYNALLKFEGQGVI* |
JGI25926J51410_10030076 | F036073 | AGGAG | MSETIEQTKPYDADLHCKKIAWMVKNSPDWDYEKQTLEEYLETVPEYPTDEQVKDFNHLYVEPFVPFKKEKPYQGDQVNEAS* |
JGI25926J51410_10030077 | F076813 | AGGAG | MKHHNHFDQNGDIRDIFAAMAMQSLMKQDAATPKWVAHQAYKYADAMLEVREEVSHNEEIK* |
JGI25926J51410_10030079 | F014710 | N/A | MYGMMTTMTEYKTIPTQFKKKGFTYTQLKREGKRAIFQQTREDSSLNNYEVVKIGRHNGYLMGGVMIEPSETYPGSSLWGITAWTCSSIDAAMQRYDTLPS* |
⦗Top⦘ |