Scaffold JGI25926J51410_1001967

Overview

Basic Information

• Taxon OID: 3300003490
• Scaffold ID: JGI25926J51410_1001967
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MM110.SN
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4112
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (27.27%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F021092	Metagenome / Metatranscriptome	220	N
F026511	Metagenome / Metatranscriptome	197	N
F052474	Metagenome / Metatranscriptome	142	N

Sequences

Protein ID	Family	RBS	Sequence
JGI25926J51410_100196710	F021092	AGTAG	MTDPHYILEYMQDNDLRYFQVANQFNRDVVVSFNDRSLEDGVEKMRKFLSKNTGFHRIKLYTNNDLKANGIPRQEPQVFEVSITGKEFDEPKAEVKEITGFGVNPGYPSAGGIIGVEQYLNKHEENATLREKIKGLELEIQYMRERHEKDLERLRADQELALKAAKDSNQMFSQGLGMLMNRMGVGE*
JGI25926J51410_10019675	F026511	N/A	MNTTTDCQAVGDSQMITSDCVAIAFKRPTGSNPVNVIGYQLAEGETLTISQNVGDIDRTQYDVRITETVVGASLCYVFRTLIQD*
JGI25926J51410_10019679	F052474	N/A	MSDKEKILNAINKLAKLDPLLGENLSKLAELAEKKPFIYQQAIKQLNSL*