Scaffold JGI25926J51410_1001708

Overview

Basic Information

• Taxon OID: 3300003490
• Scaffold ID: JGI25926J51410_1001708
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MM110.SN
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4362
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (75.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F034165	Metagenome / Metatranscriptome	175	Y
F056554	Metagenome / Metatranscriptome	137	Y
F090310	Metagenome	108	Y
F098561	Metagenome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI25926J51410_10017083	F098561	AGGAG	MAITLGKDCSIVLDGGFIRSARNVTLTESARTIEVNPYGSRYAATYSTGYECTVSVELNDAADLGTAFQKMHSGGTFQVIGGAAGFSFLAVLTGISETDPIDGVSVFTLEGKMTDPRLVR
JGI25926J51410_10017084	F056554	AGGA	MAISLGKDASAPPFGEGIISATFTEECETVDISNRSNIGGSAGAPGRRVSKAGFVTKTWEIECHDPDGLITSLTAAGTAGSFSIMSVSENIGVDGAVTYNVTAKEF*
JGI25926J51410_10017085	F034165	GAGG	MPIGSVEITLGKDVTITGVTNARSCTVTNSASEVDVTKFGDTSRKFRKALIEQTIELECVDAPGVSIGGTFTISGTQTGNATYICTNIARSQPLDGIETFTVSGSRTVSA*
JGI25926J51410_10017087	F090310	AGGAGG	VSSVLRTIADRLATGLQSVTWSIPSTTVERRNWANIDVDAMSVPKVFVIPGSADVTRISRTHMQVDYSVTVFVGRHVTTDGEVDGMLDLADRVMLYVRAHSFGAGVTWPAGVTSPQTVSIDLNPDDALTERNVWRAVITATYRVFESNVLPTV*