Scaffold JGI25926J51410_1001317

Overview

Basic Information

• Taxon OID: 3300003490
• Scaffold ID: JGI25926J51410_1001317
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MM110.SN
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4776
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (57.14%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003049	Metagenome	510	Y
F081046	Metagenome	114	N

Sequences

Protein ID	Family	RBS	Sequence
JGI25926J51410_10013173	F003049	AGGA	MKNAKQIIGCRKSKKGEDTKGLGIIKFGKSRPDPTKYVKVDITYDEKAEKDLYECGMLALKHDKEAVIQYVIVKALTGYAKCKK*
JGI25926J51410_10013177	F081046	GAG	MTAKTIKYSQRLGDIIRCLPACKYLADQGHEVFVDCLPQYHGIFEMVSYAKAGSKGDVIDLEIWPNKYQEYRFSNKTWTEFVYAHPEINKADPTNILFDKLDNEPAKGLPEVYNMVAPFGISQGEKQDPLKIIVEARNKAGAYSFIVLAPEGFKISGLQTYTAPSVLEMAKAIRGAKEFYAINSAPMTIAAGVRKEKKVIFYPQKIEPFDKDNLFIWDSVELN*