Scaffold JGI25926J51410_1000617

Overview

Basic Information

• Taxon OID: 3300003490
• Scaffold ID: JGI25926J51410_1000617
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MM110.SN
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6377
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 17 (94.44%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012108	Metagenome / Metatranscriptome	283	Y
F054798	Metagenome / Metatranscriptome	139	N
F074805	Metagenome / Metatranscriptome	119	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI25926J51410_100061713	F074805	AGG	MSDFVVLSGILFAVTCAVVGFVFYSVYGGSKASLANAKDGQVYNFVYQQPLHGTHERFLAKVVGKQTLTADQIARLNRKSRYRIGDPEFIRTANLVTCQTPDGKIRNFYAERVSNCRKPLLAKVLFKSGVASLL*
JGI25926J51410_10006172	F012108	GGA	MIKIELSVRESLNMIANGCSLDMXDKIVCALEVALGVNQRRVVTITAGMNTDNRIACIKAIRLHTGWGLKEAKDWSDYLVGGWKYDKWHPAPAGVKHSMTLKTPEAAEALLRELTTLGCEGFLS*
JGI25926J51410_10006176	F054798	GGAGG	MIYLNINEIERLAEIVAELVKLGMSVTAELKYDRWQIEVYK*