Scaffold JGI25926J51410_1000579

Overview

Basic Information

• Taxon OID: 3300003490
• Scaffold ID: JGI25926J51410_1000579
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MM110.SN
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6573
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (87.50%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009331	Metagenome / Metatranscriptome	319	Y
F013279	Metagenome / Metatranscriptome	272	Y
F016784	Metagenome / Metatranscriptome	244	Y
F093487	Metagenome / Metatranscriptome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI25926J51410_100057910	F009331	GAGG	MICQNCHKAGEENTLTHYKRSAQWHDKCDDKGCVCQHKTGPGHVKRAGVRVELVQTQSP*
JGI25926J51410_100057915	F013279	AGGCGG	MQYDYRCPDCNGEMTIERSIHEDPREPSCFHCHIPMIRKWDTPAITFKGKGFYSNGG*
JGI25926J51410_10005793	F016784	GGA	MEFNTFDYVEPEFKDVIATSEYAAHYWFEQGWKACRLAFLLHKQAEETGAFRV*
JGI25926J51410_10005799	F093487	AGGAG	MAVAIKPLRHRRRTAQRGKSLSQSQRWGKVVTIMPVPGGEITTTEILVPVVEEVVEEVEDDLPELS*