Scaffold JGI25926J51410

Basic Information
Taxon OID	3300003490 Open in IMG/M
Scaffold ID	JGI25926J51410_1000517 Open in IMG/M
Source Dataset Name	Freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MM110.SN
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300003490 Open in IMG/M

Scaffold ID

JGI25926J51410_1000517 Open in IMG/M

Source Dataset Name

Freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MM110.SN

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	6872
Total Scaffold Genes	12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	10 (83.33%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (80.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

6872

Total Scaffold Genes

12 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

10 (83.33%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (80.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Michigan, USA
Coordinates	Lat. (^o)	43.1998	Long. (^o)	-86.5698	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Michigan, USA

Coordinates

Lat. (^o)

43.1998

Long. (^o)

-86.5698

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015204	Metagenome / Metatranscriptome	256	Y
F017819	Metagenome / Metatranscriptome	238	Y
F027494	Metagenome	194	Y
F077027	Metagenome / Metatranscriptome	117	Y
F078264	Metagenome	116	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI25926J51410_100051711	F015204	GGAG	MTFEDWWLQLSKAEHKLIGKENARFVWQECQKYTMMTIEDACKAQVAYDQGMKDGRERYEVHVAGWTLSPGVLPGNIWISDAGGEGGDFHIHELAEVIGKFXKEKF*
JGI25926J51410_10005173	F078264	AGGAG	MGRPATPRTQVVPANPEPYIRQPMKKRGRPKKNGRPKKDRYDAVRASPSKRAGQRWITVSVPEEAYYMLKEVAAFYKMGMGAYLHCLLIPVFDIAYEESLTLQRIAKTREKAKNEISNRDDVPRRTHF*
JGI25926J51410_10005174	F027494	GAG	MKYQTEMTFPVELTFEVLPAMLVEDTELPAQLDITKVLLTITGPSGKPRQVDITKTLTEEQMMLFEDDIAENYRENSTF*
JGI25926J51410_10005177	F017819	N/A	MRKRSKYRPRPVLQNPLEFVLSGLMPVRDLPGTYLDVQIKNRAALDHLRRGEANKNDIDMLIGAFNITEALALMGKGHDWLDEIKQGQDALLALSQRGVANGMRFIMTAKQWAALQLVMDLHEEQLAHATVHDIEKAHDFVLKALAQGKARAIVEIQKETT*
JGI25926J51410_10005179	F077027	GAG	MNFNLNIHRVKSIRFSATRSSKTNDMFSASRDIVIETEEGDFELTLFSVYVDEDCDEQLLEIRA*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold JGI25926J51410_1000517

Overview

Ecosystem & Geography

Associated Families

Sequences