Scaffold JGI25926J51410_1000302

Overview

Basic Information

• Taxon OID: 3300003490
• Scaffold ID: JGI25926J51410_1000302
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MM110.SN
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8191
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (93.75%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F027776	Metagenome	193	Y
F051705	Metagenome	143	N
F079788	Metagenome	115	Y
F098688	Metagenome	103	N

Sequences

Protein ID	Family	RBS	Sequence
JGI25926J51410_10003024	F051705	GAGG	MQIIAIFQNDDEAIKAIHSELAWQTLHDINQVLRLNRKHGLPFEQAVSQIQESVNDALALIPD*
JGI25926J51410_10003026	F098688	AGG	MSKRDLALDSLTRICEIQQRLINQLIAMEQNSYARGYEDGMAAQAEVDIALNEIASGESK
JGI25926J51410_10003028	F079788	AGGAG	MDTDDEIESWASIALGLIASIFFFIGLMAVVAAACMAFGYFTYQPLCGSIAALFTQECKLT*
JGI25926J51410_10003029	F027776	GGTGG	MMNPLEIEIKRTVFAHLPAVGDFGILSRGDLATVLHTACTEAALAGWARGADSVQRRLDQEMEILRQELKSIQIELDYAKAN*