Scaffold JGI25926J51410_1000022

Overview

Basic Information

• Taxon OID: 3300003490
• Scaffold ID: JGI25926J51410_1000022
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MM110.SN
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 17014
• Total Scaffold Genes: 25
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 20 (80.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002286	Metagenome	574	Y
F002653	Metagenome	539	Y
F021488	Metagenome	218	Y
F078246	Metagenome	116	Y
F097207	Metagenome / Metatranscriptome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI25926J51410_100002212	F002653	AGGAG	MSYVHGDFSMTEEELERRVEAMSEEEQHHFRLLIHKLVMCYGEGKAQGVFIIGRAEDQVAGVVTLNCNEMEASQLMLAANDFFGFLNVLGAPPKENFN*
JGI25926J51410_100002222	F002286	N/A	MAAKKTPGNQLGRWAIYLDFPVTKIAYALGVTRQTVYNWFEGKDVFVAYQNRVELLLEIMKSSTDAQQAWRKICKEYNLEP*
JGI25926J51410_10000224	F097207	AGGA	MPDMQTALSNALKTTINDWEKDDMQTTQTNTQGKKFFGVTNNVTRATFEYVKNNPNETSPEICAGMEKLGYKPSSVSSLIAQFAVQGLAERDDRGRYITIVPEYRPLKAKKKTLTLVSKPEEIKPKRKYEKRAVTGIGALLREKLENTPMPSQDALDAAAYAMGGSVNKRFTSLVRTKSPEDILKDMTVFQARELYDYLKKMFGG*
JGI25926J51410_10000226	F021488	GGAG	MSDTIFNKEDFNNIFGKPEMFIRPDPLVRNAVLEEVALEFDAMRIAFGDTADSFARYVREMKS*
JGI25926J51410_10000228	F078246	AGGAG	MPRPKPPEPITFRNIRMSDRQWIIFNQLGGAEWLRGFLEKKAPMPKKYYDDELTRMQNPADAVFLKQRREEND*