NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI25919J51413_1016371

Scaffold JGI25919J51413_1016371


Overview

Basic Information
Taxon OID3300003488 Open in IMG/M
Scaffold IDJGI25919J51413_1016371 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MM110.DN
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)576
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameLake Michigan, USA
CoordinatesLat. (o)43.1998Long. (o)-86.5698Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F026552Metagenome197N
F049442Metagenome146N

Sequences

Protein IDFamilyRBSSequence
JGI25919J51413_10163711F049442N/AMNKKNLEQGLTKLLKTFFTKKYDRDFSDLTVVLDEYEEDADDXDXEGNWSSAESYXFTVYSNDFDGLPIQKLYELARELFGNIIGSKNWIDI
JGI25919J51413_10163712F026552N/AIIEKFEVNVSPFESKILVIKMFLNITKDEFLGTGESTPRLSEWEVRGKLWEDYNLDPAWWHAYIIPNKILKPLVGKDYFIKILLFVVDKNGIHLFTEN*

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