NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI26531J51214_10020463

Scaffold JGI26531J51214_10020463


Overview

Basic Information
Taxon OID3300003486 Open in IMG/M
Scaffold IDJGI26531J51214_10020463 Open in IMG/M
Source Dataset NameWastewater bioreactor microbial communities from Cape Town, South Africa - Thiocy_cont_500_biof
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2757
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (16.67%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Bioremediation → Hydrocarbon → Unclassified → Unclassified → Wastewater Bioreactor → Wastewater Bioreactor Microbial Communities From Cape Town, South Africa

Source Dataset Sampling Location
Location NameSouth Africa: Cape Town
CoordinatesLat. (o)-33.927Long. (o)18.452665Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F077495Metagenome / Metatranscriptome117Y

Sequences

Protein IDFamilyRBSSequence
JGI26531J51214_100204636F077495N/AMYSNRNIILLIGLTLASVSSILVQLDLFQNSLSSTSVVTVKADTVDDEQHLVANTDEDNSISNEVDDELEFYRRASLRPVALYQRASLRPFAGKRASLRPFAGKRASLRPFAGKRASLRPVNYMGKRKRRSLMYVDSE*

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