Scaffold JGI26238J51125_1007124

Overview

Basic Information

• Taxon OID: 3300003478
• Scaffold ID: JGI26238J51125_1007124
• Source Dataset Name: Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI037_S3LV_100m_DNA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3252
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location

• Location Name: Saanich Inlet, British Columbia, Canada
• Coordinates
  • Lat. (^o): 48.6
  • Long. (^o): -123.5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013137	Metagenome / Metatranscriptome	274	Y
F033216	Metagenome / Metatranscriptome	178	N
F066127	Metagenome	127	N

Sequences

Protein ID	Family	RBS	Sequence
JGI26238J51125_10071242	F033216	N/A	MAISNVKVVNTASKYIVKSKGIGSETNQVLVNANDLTGGTNKSLVSLIECYYIIESIGSTEGKLTISAAVDAEYDEQAEAAGTQVRKDLVLTGNGKYGLRPSQLKFGNDKIFKLTTDSNVRNYLLVTEFRRESNG*
JGI26238J51125_10071244	F066127	GAGG	VSEISFKSFTGKLXERKTSLPTTQFXXLSPKMKAAITDMYAMINXASDPLISKIEGIVKAVSKKHGVSVYDIEDYIDNELIK*
JGI26238J51125_10071245	F013137	AGGAG	MSNESVVNMVDSLTGGDNVAAQDAFKSALTDKIGMALDAKRQTVANDWXNAGDEHEAIEAGSEXSGQSAFDAVAAQVDADVDXHVDFEIDDDQVEEE*