Scaffold JGI26238J51125_1004153

Overview

Basic Information

• Taxon OID: 3300003478
• Scaffold ID: JGI26238J51125_1004153
• Source Dataset Name: Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI037_S3LV_100m_DNA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4552
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location

• Location Name: Saanich Inlet, British Columbia, Canada
• Coordinates
  • Lat. (^o): 48.6
  • Long. (^o): -123.5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007003	Metagenome / Metatranscriptome	360	Y
F040325	Metagenome / Metatranscriptome	162	Y
F056888	Metagenome / Metatranscriptome	137	N

Sequences

Protein ID	Family	RBS	Sequence
JGI26238J51125_10041533	F040325	N/A	MARRKIGNSHTTICVTWEDKELFRKFASFVKKTRTGNLYESDAVLFGKMLNHFKDNXTIGEVSNTTYPSKS*
JGI26238J51125_10041534	F007003	N/A	MINFFTKNINHKTYTDIIERTIMFNGHDGXHKSSYXALERFRKDWTLNIIPVTSQEDFKAFYNHLDIEVSDGIAWGVTGYKVIYMFVNDSKNPFMLRSNIMPLAHELLHAIYQDTVGTFHITRKYNSPEGRAGTRGAAATVIVHDNWYGSKKTIKFWIRWNMIWLPITIPFIPIKQAKEDYPI*
JGI26238J51125_10041536	F056888	N/A	MNVSEVLDIKGSTTNSTKLVAGDKITIQGFHIKNVDEVGAEVAEISTTEGLRHSFGKTIIGQAKSDYWKDVVQKCVDKDAADGLDAYVVEREAEKTGRMMLCLSMFPPKN*