Scaffold JGI26238J51125

Basic Information
Taxon OID	3300003478 Open in IMG/M
Scaffold ID	JGI26238J51125_1004066 Open in IMG/M
Source Dataset Name	Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI037_S3LV_100m_DNA
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	4612
Total Scaffold Genes	9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (33.33%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Associated Families	4

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location
Location Name	Saanich Inlet, British Columbia, Canada
Coordinates	Lat. (^o)	48.6	Long. (^o)	-123.5	Alt. (m)	Depth (m)
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F001235	Metagenome / Metatranscriptome	741	Y
F051547	Metagenome	144	N
F071758	Metagenome / Metatranscriptome	122	Y
F102085	Metagenome	102	N

Family

Category

Number of Sequences

3D Structure?

Metagenome / Metatranscriptome

741

Metagenome

144

Metagenome / Metatranscriptome

122

Metagenome

102

Protein ID	Family	RBS	Sequence
JGI26238J51125_10040663	F001235	AGGA	LPEKLETNENANDMTKKLWEKHQADEFTAVNNYKEGVCLGCMKVDRAAATIADICGDCAGKKGREPLLAKVCDKYYGLCFFCSKYKFNIEQVNGRFCNTCHSRIAKITKEYNKKGGFMKTDPFWISMRKKHGKDWKQIMGGYRKSNRK*
JGI26238J51125_10040665	F102085	N/A	MATSIYIFDSDRMFKAVYREHMDDVEYKMPLIDLYVKGQRLWVVTNSNDMKEQPRMDRSIVHFRKDNAKEYVEGDEKLVTHGKIRYNEKRNQLEFFPRFLRKPLLSMRVGRYFGISEGKCNIDYDKRYYDFKNDRMIFILEDKE*
JGI26238J51125_10040666	F071758	N/A	MDEKCKKCKIIKYGYTDGIHSIFICFKCGRYDGISGGDESFIXQINEDPMMLLAMIKDKKLNPIS*
JGI26238J51125_10040668	F051547	GGA	MIDPLLIATLSVIGGAILNTFRGFLGSSESTYDIKKFFGALIVAVFAGIAVAQTLSLAGLGIVETVLIGLSVGFSVDYAVSKAKKPQ*

Protein ID

Family

RBS

Sequence

JGI26238J51125_10040663

AGGA

LPEKLETNENANDMTKKLWEKHQADEFTAVNNYKEGVCLGCMKVDRAAATIADICGDCAGKKGREPLLAKVCDKYYGLCFFCSKYKFNIEQVNGRFCNTCHSRIAKITKEYNKKGGFMKTDPFWISMRKKHGKDWKQIMGGYRKSNRK*

JGI26238J51125_10040665

N/A

MATSIYIFDSDRMFKAVYREHMDDVEYKMPLIDLYVKGQRLWVVTNSNDMKEQPRMDRSIVHFRKDNAKEYVEGDEKLVTHGKIRYNEKRNQLEFFPRFLRKPLLSMRVGRYFGISEGKCNIDYDKRYYDFKNDRMIFILEDKE*

JGI26238J51125_10040666

N/A

MDEKCKKCKIIKYGYTDGIHSIFICFKCGRYDGISGGDESFIXQINEDPMMLLAMIKDKKLNPIS*

JGI26238J51125_10040668

GGA

MIDPLLIATLSVIGGAILNTFRGFLGSSESTYDIKKFFGALIVAVFAGIAVAQTLSLAGLGIVETVLIGLSVGFSVDYAVSKAKKPQ*

NMPFamsDB