Scaffold JGI26238J51125_1003176

Overview

Basic Information

• Taxon OID: 3300003478
• Scaffold ID: JGI26238J51125_1003176
• Source Dataset Name: Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI037_S3LV_100m_DNA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5340
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (14.29%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location

• Location Name: Saanich Inlet, British Columbia, Canada
• Coordinates
  • Lat. (^o): 48.6
  • Long. (^o): -123.5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015734	Metagenome / Metatranscriptome	252	Y
F019756	Metagenome / Metatranscriptome	228	Y
F050011	Metagenome	146	N
F074154	Metagenome	120	N

Sequences

Protein ID	Family	RBS	Sequence
JGI26238J51125_10031763	F050011	N/A	MNTALENFSEYIKPYLLDIIAIKTDKKVIRKGKLKIFQVKQHYARLTLEDGERTRIYEIPYPYDISKEGNVTTLNYKTDIFLNIQDLNLQVKLLDSTKKSKLYDELVYILPLREVD*
JGI26238J51125_10031764	F015734	N/A	VIIQRSSLDVALLSNVCDVRFVRRDPRQGDGPTRRMFATKSYDLLNSVNGRTTLNYFTPKGPKKINEAADNLLVVWDILMQNYRTINCNQVDLIEKIPATEEFWTYFNENIYPMSPAQKAGFMNS*
JGI26238J51125_10031765	F019756	N/A	MPAHESIDRLPSQKHLIDLSTHSEGDIGLTDDFELNFIFDDILLVEYVDENDEGEIQRNGIFVPTNAVTKAWRKARVILTGPKAEYTKVGDVVIFPNNLGVSISNLDINGKKLKKGIFLNEDRLFGICTLKE*
JGI26238J51125_10031766	F074154	N/A	MNFFQLQNKLFFSDKRKQPDYIDSEGEQTFVPFLLNRWLSMYSKDTVSFTNNILNKYCSIFDDKQRMFRFYYNIIPRLQFKRISYIKKKKREKTEEVEHLELIAKNKHISVRELKSYMEM