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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300003478 Open in IMG/M |
| Scaffold ID | JGI26238J51125_1003154 Open in IMG/M |
| Source Dataset Name | Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI037_S3LV_100m_DNA |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 5353 |
| Total Scaffold Genes | 10 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (40.00%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (40.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Saanich Inlet, British Columbia, Canada | |||||||
| Coordinates | Lat. (o) | 48.6 | Long. (o) | -123.5 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F001235 | Metagenome / Metatranscriptome | 741 | Y |
| F051547 | Metagenome | 144 | N |
| F060433 | Metagenome | 133 | Y |
| F071758 | Metagenome / Metatranscriptome | 122 | Y |
| F102085 | Metagenome | 102 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| JGI26238J51125_10031542 | F051547 | AGGAG | VKSMIDPLLIATISVIGGAILNTVRGFLGSDETTYDIKKFFGALIIAVFAGIAVAQTLSLASLGITETILIGLSVGFSVDYAVSKAKKTV* |
| JGI26238J51125_10031543 | F060433 | N/A | MEFSSIIETLLIAALLGMGGALFAFFKKMSATQSDLCETVARLQKTLIILAKAVDRQSNRLHPDEANSELDDLVKELLDKP* |
| JGI26238J51125_10031544 | F071758 | N/A | MEEKCPECKIIKYGYTDGQHSIFICFKCGRFDGISGGDDTFVAKIIEEPMSLLMMIEQKILVPIS* |
| JGI26238J51125_10031545 | F102085 | N/A | MATSIYIFDSDKMFNAIYREHVDDLEHKMPLIDLYVKGQKLWVVTNSNDMKEQPRLDRSIVHFRKDNAKEWIEGDEKLVLHGKIRYNHKRNQLEFFPRLLRKPLLSMRVGRFFGNKKGKCYINYDKRYYDFKNDRMLFILENENEI* |
| JGI26238J51125_10031547 | F001235 | AGGA | LPTELNTNENANDMTKKLWERHQSDEFTKVNNYKEGVCLGCMKVDVAAATIADICGDCAGKKGREPLLAKVCDKYYGLCFFCSKYKFNIEQVNGRFCNTCHSRIAKITKEYNEKGGFMKTDPFWISMRKKHGKDWKQIMGGYKKSNRR* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |