Scaffold JGI26238J51125

Basic Information
Taxon OID	3300003478 Open in IMG/M
Scaffold ID	JGI26238J51125_1000016 Open in IMG/M
Source Dataset Name	Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI037_S3LV_100m_DNA
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300003478 Open in IMG/M

Scaffold ID

JGI26238J51125_1000016 Open in IMG/M

Source Dataset Name

Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI037_S3LV_100m_DNA

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	75207
Total Scaffold Genes	121 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	79 (65.29%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (57.14%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

75207

Total Scaffold Genes

121 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

79 (65.29%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (57.14%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location
Location Name	Saanich Inlet, British Columbia, Canada
Coordinates	Lat. (^o)	48.6	Long. (^o)	-123.5	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Saanich Inlet, British Columbia, Canada

Coordinates

Lat. (^o)

48.6

Long. (^o)

-123.5

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002191	Metagenome / Metatranscriptome	585	Y
F002964	Metagenome / Metatranscriptome	517	Y
F006307	Metagenome / Metatranscriptome	376	Y
F012719	Metagenome / Metatranscriptome	278	Y
F026287	Metagenome	198	Y
F036432	Metagenome / Metatranscriptome	170	Y
F077775	Metagenome / Metatranscriptome	117	N

Sequences

Protein ID	Family	RBS	Sequence
JGI26238J51125_1000016102	F012719	N/A	MKIDYYLKWIATGILMIGAGLNSLAIYPWGPLANLVGGLTWLVVAIMWREAALITTNVVLSTITILGLTYNFIQ*
JGI26238J51125_1000016103	F077775	AGGAG	MKKQKCSICAKLFTHNKPDTLVGKLGPIPVQFCKPCFKKVMKKDHLPLNDKRK*
JGI26238J51125_1000016111	F026287	GAG	MGKIANKLVKKGLIYLTFLLFLFAICSCDVKSCKIRPDLEKIGDSALKNKENLTETNLQHAYMRCKY*
JGI26238J51125_1000016112	F006307	N/A	MEKYCLNCGHDCHCGGDCIKEYDKGNKIVCCGHCRCDKKENTTTNNEDLFNGA*
JGI26238J51125_100001613	F002191	AGG	MSKTLKEFRTQLHEATASKTNLQYIRAKTAKNDHFETRRYIAAEILRDKKLADTYSALEVVHDNYASVVGNDAIALRQKLERELQKQLKQKISNWDEVWSDL*
JGI26238J51125_100001634	F036432	AGGA	MLKDRRIDPEIDEGTQKFFNKLILILIVLNVLIGVPTIYDIYFYEHTPKVYRDTSTIQTNEI*
JGI26238J51125_100001635	F002964	N/A	MRTLIRTIFGLVIILYNTVTYAGPEGLQNYPWTLQHAPIWCGPLDIVNQALEKEGYEEIEIAVGRTAALPTGDIVYAVITYISKDTEGHIIRTMETPEQQEKCILNVLFDYTVVESKPKPSN*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold JGI26238J51125_1000016

Overview

Ecosystem & Geography

Associated Families

Sequences