NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold nap3_10079220

Scaffold nap3_10079220


Overview

Basic Information
Taxon OID3300003477 Open in IMG/M
Scaffold IDnap3_10079220 Open in IMG/M
Source Dataset NameEstuarine microbial communities from the Sarno estuary, Gulf of Naples, Italy - Sample Station 3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing Center
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)765
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → unclassified Candidatus Pelagibacter → Candidatus Pelagibacter sp. TMED64(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Estuarine → Estuary Microbial Community From Gulf Of Naples, Italy

Source Dataset Sampling Location
Location NameGulf of Naples
CoordinatesLat. (o)40.7255Long. (o)14.44767Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F051183Metagenome / Metatranscriptome144N

Sequences

Protein IDFamilyRBSSequence
nap3_100792201F051183N/AYTTFINQNFEKDVNGIVTGMAFPDDLNTLYLASGKDVNVSDVGEVNVEELIDGEVAVINYAASGKYKRATWGVVSNPNNTDELEKKFMAQIAKGYPKNYQQPQDTMVEEMLGNREPEQKTETVDDLPF*

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