Scaffold nap3_10037722

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold nap3_10037722

Scaffold nap3_10037722

Overview

Basic Information
Taxon OID	3300003477 Open in IMG/M
Scaffold ID	nap3_10037722 Open in IMG/M
Source Dataset Name	Estuarine microbial communities from the Sarno estuary, Gulf of Naples, Italy - Sample Station 3
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1070
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (25.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Estuarine → Estuary Microbial Community From Gulf Of Naples, Italy

Source Dataset Sampling Location
Location Name	Gulf of Naples
Coordinates	Lat. (^o)	40.7255	Long. (^o)	14.44767	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F038463	Metagenome / Metatranscriptome	166	Y
F102066	Metagenome	102	N

Sequences

Protein ID	Family	RBS	Sequence
nap3_100377222	F038463	N/A	MSYLILPKRAFNSPLIEYANFQDESFVNLIKLNKPYANGIAYAVYETTNNAFCSNGLFTTYEKAKLKFELMIKNHTYNSKLIKKEKINNN*
nap3_100377223	F102066	N/A	MDFILTIILAIATYGFGFVSGVINGTETKEIQEDNKPINEHRKEAFEFAFKNFINK*

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