Scaffold nap3_10034040

Overview

Basic Information

• Taxon OID: 3300003477
• Scaffold ID: nap3_10034040
• Source Dataset Name: Estuarine microbial communities from the Sarno estuary, Gulf of Naples, Italy - Sample Station 3
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1121
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → unclassified viruses → Virus sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Estuarine → Estuary Microbial Community From Gulf Of Naples, Italy

Source Dataset Sampling Location

• Location Name: Gulf of Naples
• Coordinates
  • Lat. (^o): 40.7255
  • Long. (^o): 14.44767
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F036730	Metagenome / Metatranscriptome	169	Y
F059061	Metagenome / Metatranscriptome	134	Y

Sequences

Protein ID	Family	RBS	Sequence
nap3_100340401	F036730	AGGCGG	MAQEFVIKSQNLEDKINQLLPSQGGAAAGVDLSASTMVVPIIDLTESAEGSSLRQDLQTSFSFTQC
nap3_100340403	F059061	N/A	VINRQIFGGSRPQSASQGPALTTITNVGAQESQGSGTIQAGAGALLPTLVNAGRGLLKSPLGQLTLGTGAGAALSLMSSDGKKMRITRKMKSQARTVLNIAGGNISVAADILNISDEMLVTILLKRFRNDGPVVTKAALRKTKSTIRRLHSMQDVLKSITPTTTGRRRAPMKRAMSTTLIKN*