NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold nap3_10034040

Scaffold nap3_10034040


Overview

Basic Information
Taxon OID3300003477 Open in IMG/M
Scaffold IDnap3_10034040 Open in IMG/M
Source Dataset NameEstuarine microbial communities from the Sarno estuary, Gulf of Naples, Italy - Sample Station 3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing Center
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1121
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → unclassified viruses → Virus sp.(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Estuarine → Estuary Microbial Community From Gulf Of Naples, Italy

Source Dataset Sampling Location
Location NameGulf of Naples
CoordinatesLat. (o)40.7255Long. (o)14.44767Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F036730Metagenome / Metatranscriptome169Y
F059061Metagenome / Metatranscriptome134Y

Sequences

Protein IDFamilyRBSSequence
nap3_100340401F036730AGGCGGMAQEFVIKSQNLEDKINQLLPSQGGAAAGVDLSASTMVVPIIDLTESAEGSSLRQDLQTSFSFTQC
nap3_100340403F059061N/AVINRQIFGGSRPQSASQGPALTTITNVGAQESQGSGTIQAGAGALLPTLVNAGRGLLKSPLGQLTLGTGAGAALSLMSSDGKKMRITRKMKSQARTVLNIAGGNISVAADILNISDEMLVTILLKRFRNDGPVVTKAALRKTKSTIRRLHSMQDVLKSITPTTTGRRRAPMKRAMSTTLIKN*

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