Scaffold NAP2_1005348

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold NAP2_1005348

Scaffold NAP2_1005348

Overview

Basic Information
Taxon OID	3300003476 Open in IMG/M
Scaffold ID	NAP2_1005348 Open in IMG/M
Source Dataset Name	Estuarine microbial communities from the Sarno estuary, Gulf of Naples, Italy - Sample Station 2
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2348
Total Scaffold Genes	5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (60.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → Viruses	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Estuarine → Estuary Microbial Community From Gulf Of Naples, Italy

Source Dataset Sampling Location
Location Name	Gulf of Naples
Coordinates	Lat. (^o)	40.725	Long. (^o)	14.39983	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000754	Metagenome / Metatranscriptome	906	Y
F001416	Metagenome / Metatranscriptome	699	Y

Sequences

Protein ID	Family	RBS	Sequence
NAP2_10053481	F001416	AGG	MPLIKKRVSIAAGATSEQILSGTTYEYVNPGTRIVVAAQDATSSYEAKTNLQFTVNNAEFSRDALVSEKVTGEAFGWNGTGYVMNDMLTSGSVRN
NAP2_10053485	F000754	N/A	ATSSYEAKTNLQFTVNNAEFSRDALVSEKVTGEAFGWNGTGYVMNDMLTSGSVRNRPIITFTNTGSATADIDVAVFIGSQ*

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