Scaffold NAP4_1140106

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold NAP4_1140106

Scaffold NAP4_1140106

Overview

Basic Information
Taxon OID	3300003474 Open in IMG/M
Scaffold ID	NAP4_1140106 Open in IMG/M
Source Dataset Name	Estuarine microbial communities from the Sarno estuary, Gulf of Naples, Italy - Sample Station 4
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	514
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Estuarine → Estuary Microbial Community From Gulf Of Naples, Italy

Source Dataset Sampling Location
Location Name	Sarno river estuary, Gulf of Naples
Coordinates	Lat. (^o)	40.72683	Long. (^o)	14.46133	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F024116	Metagenome / Metatranscriptome	207	Y
F077328	Metagenome / Metatranscriptome	117	Y

Sequences

Protein ID	Family	RBS	Sequence
NAP4_11401061	F077328	N/A	EEEEYTYTEQVVDTTTLQSPTWKESAFKLGKLGSPRWNNDGTKVLVKYELPIADGTLDAVKGTSGITALSHSEAIEEMKKDEWSGE*
NAP4_11401062	F024116	AGAAG	MSGLVNEDWKDYVSIIAFLVIVLGGLVLLGSCDSGWSVAGYEV*

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