Basic Information | |
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Taxon OID | 3300003474 Open in IMG/M |
Scaffold ID | NAP4_1019288 Open in IMG/M |
Source Dataset Name | Estuarine microbial communities from the Sarno estuary, Gulf of Naples, Italy - Sample Station 4 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 1240 |
Total Scaffold Genes | 2 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (50.00%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (50.00%) |
Associated Families | 2 |
Taxonomy | |
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All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Estuarine → Estuary Microbial Community From Gulf Of Naples, Italy |
Source Dataset Sampling Location | ||||||||
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Location Name | Sarno river estuary, Gulf of Naples | |||||||
Coordinates | Lat. (o) | 40.72683 | Long. (o) | 14.46133 | Alt. (m) | Depth (m) | 0 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F014506 | Metagenome / Metatranscriptome | 262 | Y |
F021305 | Metagenome / Metatranscriptome | 219 | Y |
Protein ID | Family | RBS | Sequence |
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NAP4_10192881 | F014506 | N/A | ADIMQQQALTLDYNTVLNIGASQSSIYGDITNTANLMVYDNMKQVGLTVGRSKVSLNDNYQVTWVDGVNLTYMRSFSMNSTTLSLSRMKPMGKWGTVGVGVNYSFMFGKDALGNTMPKMGSGGYNFLYTNMVKVNERIMYTPAIIMAQNPISYTQKMDGFDAFASTSKDIIGILANSFTIQLTKSFSFNAGWTIIYSSNEFVPIMNSFMIGAKLPF* |
NAP4_10192882 | F021305 | AGGAG | MKRKHITIISLLILSAWAVGYFNQHYRAPKIEYVEIERLQTVIDSIYVDRIIEKEIFVPKYITNTITDTVEIEVVKEVIVEKPVEVIKEVFVDRPVDVFVPKYELPEAKWYAGFSYQYDLENYLSGANVQLLHKFKSDKMFSLDVGFRNDLLDKETGVGKLRPYVGGTIYFRIDKPKNN* |
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