Scaffold NAP4_1000711

Overview

Basic Information

• Taxon OID: 3300003474
• Scaffold ID: NAP4_1000711
• Source Dataset Name: Estuarine microbial communities from the Sarno estuary, Gulf of Naples, Italy - Sample Station 4
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4831
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (21.43%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Estuarine → Estuary Microbial Community From Gulf Of Naples, Italy

Source Dataset Sampling Location

• Location Name: Sarno river estuary, Gulf of Naples
• Coordinates
  • Lat. (^o): 40.72683
  • Long. (^o): 14.46133
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003492	Metagenome / Metatranscriptome	483	Y
F099126	Metagenome	103	N

Sequences

Protein ID	Family	RBS	Sequence
NAP4_100071114	F099126	N/A	MKLVEELNELAAVIMQQNNKPYKDLTKEIQDEIADVKVWLSEYEELFDWNYIDNRITNKRFKHKL*
NAP4_10007112	F003492	N/A	MSKTLLTDEIIKEKLEQDGIMEEPDALWLLEYINTEYGGKLDNTTDWNDSKHILKIYSESTADSYDIYWCTHDERPYVSQDGYQYEDYSEWSDQAINELVSGADVWVEPHLWDDMEYDFNHELEQWWQDVYEEKESDMKDELIDSGEYYVEEE*