Scaffold NAP4_1000120

Overview

Basic Information

• Taxon OID: 3300003474
• Scaffold ID: NAP4_1000120
• Source Dataset Name: Estuarine microbial communities from the Sarno estuary, Gulf of Naples, Italy - Sample Station 4
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9294
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (17.65%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Estuarine → Estuary Microbial Community From Gulf Of Naples, Italy

Source Dataset Sampling Location

• Location Name: Sarno river estuary, Gulf of Naples
• Coordinates
  • Lat. (^o): 40.72683
  • Long. (^o): 14.46133
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005287	Metagenome / Metatranscriptome	406	Y
F034890	Metagenome / Metatranscriptome	173	Y

Sequences

Protein ID	Family	RBS	Sequence
NAP4_100012011	F034890	N/A	MIQIEDSNNEKYHINPKQVVYVKERLHLNKLLFKILLVNGEVIMTSNEHGAKCIIASIKSKKA*
NAP4_10001208	F005287	N/A	MKINSSDIIYSEHGEDECFEYKVDGGRVPEGEAVGFLINYGKDFVLFNDIKYSEHDHTYWDNYELENDVNRIVLP*