Scaffold NAP4_1000027

Overview

Basic Information

• Taxon OID: 3300003474
• Scaffold ID: NAP4_1000027
• Source Dataset Name: Estuarine microbial communities from the Sarno estuary, Gulf of Naples, Italy - Sample Station 4
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 15511
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (40.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Estuarine → Estuary Microbial Community From Gulf Of Naples, Italy

Source Dataset Sampling Location

• Location Name: Sarno river estuary, Gulf of Naples
• Coordinates
  • Lat. (^o): 40.72683
  • Long. (^o): 14.46133
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008946	Metagenome / Metatranscriptome	325	Y
F027182	Metagenome / Metatranscriptome	195	N
F085541	Metagenome / Metatranscriptome	111	N

Sequences

Protein ID	Family	RBS	Sequence
NAP4_100002710	F008946	GGA	MARPARRPVVRPNPLAFQQRTIAAGSSATAKENKEKADNLQTKVTSLESDPFFVTIDGGGPVLDDTDIFDGGQPDA*
NAP4_10000277	F027182	N/A	MANILQQIGTTVKSKLDEKVNKTDAVTDFLKSILGFPQETVAPSVDTAANITARTSDDTGTIMYGSDSTKLYVFDGSDWQIFNNS*
NAP4_10000278	F085541	GAG	MGQSVRNLLISLTSTSKAILDTESNIQARTDDELGTMAFATDTNKLYVFTDSGWVSS*