Scaffold NAP4_1000025

Overview

Basic Information

• Taxon OID: 3300003474
• Scaffold ID: NAP4_1000025
• Source Dataset Name: Estuarine microbial communities from the Sarno estuary, Gulf of Naples, Italy - Sample Station 4
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 16039
• Total Scaffold Genes: 37
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (32.43%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Estuarine → Estuary Microbial Community From Gulf Of Naples, Italy

Source Dataset Sampling Location

• Location Name: Sarno river estuary, Gulf of Naples
• Coordinates
  • Lat. (^o): 40.72683
  • Long. (^o): 14.46133
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014724	Metagenome / Metatranscriptome	260	Y
F016795	Metagenome / Metatranscriptome	244	Y
F044418	Metagenome / Metatranscriptome	154	N
F045676	Metagenome / Metatranscriptome	152	Y
F055643	Metagenome / Metatranscriptome	138	N
F067627	Metagenome / Metatranscriptome	125	Y

Sequences

Protein ID	Family	RBS	Sequence
NAP4_100002518	F055643	N/A	MTTKELIELINSTQDGEIWLYDSKLRDHLATVEQALEEDLIHFIRADVGNSTTEFIRVSI
NAP4_10000252	F067627	AGTAG	MKTLLKVLSKTQFGFVTKEDLDVLEVEMPNLPLLIRCGCDRYIAQAQDTKARMDYVEETGDYVRDVSIPSRTLDGMSTSPFVPFAVKQAIESMRAF*
NAP4_100002528	F045676	N/A	MSAERIPYPELDCSLAMSKALGNLKFLMNRTKEEWSESFTTAEAIRDAHAALVDAQKEYDKVLTLLRQANTL*
NAP4_100002529	F016795	AGGA	MTEQLETFMTEELGIIERLGSEPLEGLDLFVDVGNNVWNLDQIIHAFNNQ*
NAP4_10000258	F044418	GGAGG	MRMEERMIDYAQKWYKENDLETEKKNGSDLYLRVNDDVFTEVSHCDIRQKAILWLQSELEGVMYS*
NAP4_10000259	F014724	AGGAG	MKEEIYAIKTAIDGLSDEIEENRRHANMEDLVKVMKSINDNLCSISYDLKDLVEAKKFQNELTTALR*