Scaffold P52013CM_1004397

Overview

Basic Information

• Taxon OID: 3300003465
• Scaffold ID: P52013CM_1004397
• Source Dataset Name: Ore pile and mine drainage contaminated soil microbial communities from Mina do Sossego, Brazil - P5 sample
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Campinas
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 13210
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (56.25%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium SCN 57-15 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Mine Drainage → Ore Pile And Mine Drainage Contaminated Soil → Ore Pile And Mine Drainage Contaminated Soil Microbial Communities From Mina Do Sossego, Brazil, In A Copper Mine

Source Dataset Sampling Location

• Location Name: Mina do Sossego, Brazil
• Coordinates
  • Lat. (^o): -6.426389
  • Long. (^o): -50.051389

Associated Families

Family	Category	Number of Sequences	3D Structure?
F037652	Metagenome / Metatranscriptome	167	N
F057234	Metagenome	136	N
F057304	Metagenome	136	N
F064316	Metagenome	128	N
F072991	Metagenome	120	N
F080330	Metagenome	115	N

Sequences

Protein ID	Family	RBS	Sequence
P52013CM_10043971	F057234	GGA	MRRGPHCGPHEDHSMERVEFTLDGPPLVVPARGCILLVRFRLAGHQEMDSIFCDYGTLSGRALQLFNCRTKTFLIHATVPCDYALKVGIMTFPAEQVGEVFQLPPPPWYHRLEEDALA
P52013CM_100439713	F057304	GGAGG	MRDVLVAVMNWLARPFPSINAIVLSVFASLLFLAGVAIAWHPYITEFIDIAQAPKLRAAVRILAFIVFSCYCTLGCLCRILIQFFPERFGQDQGHI*
P52013CM_10043972	F064316	N/A	MLGDTKEEAALEVNDPKAVKPAKKVGALKMLLRQFEATGNPPLQGGEVLPPKLIGDGNYHWYPLAWLRWLAQWERVKTFILVINLIGLAMVYGSIRQRSSYEVKLPEPATELLLKSKGFDAFNQNQVESFLTFVVNAANEASSEGMPMLNLLEGSIEPAIYLRLQQKGQKTANVPLTEYPIYTLYITEVTRWRYNPATRIISACIKGFRMSNTLSGKGGMEPYRAQVEIFWEPMSNRNKWGYYLQRFDEFYGAAAEAYDTELKNRDRSGF*
P52013CM_10043973	F037652	GGA	MIPYPHFWSEEPEARRRAWRPTDEVRRRLIRWWTIQGLLLAGIIALGILVAKESKRMPPIYAGLPNGVVFATSAGPLQLDRVARIELVNDVLQILYYQEGNLNYLDAVRESVKPQLLAQFRAEMESAAKQTNSTVYLNVAETFEVLRVPAKGFESVTKANLIKRSSRESTGAPVYIRTRWLLEGSRYRLARVEEIKPGDYYELFLAEKGRLKKLSKQELERELAVRKNQEIPLPKRSPLF
P52013CM_10043974	F080330	AGGA	VKRFACFIFPCFTALTLWAGDPFAGSDASAYGAALADGARLSTRLVENVYLMPEQITKLIFPKPVDEVSVNTQVINVGRNPADSKEYYLLLSPRVASADVNMHLVMDGRTYSFRLIVGKEKVNYRKTYTVEGGGSSRNLSKDPPLAPTEINTTRLINLINQIRRDPNYATIVAKDMGFSPQGVTYLWNEAEVTLQGAWHYYSQDVVILQIEVHNPTSEAVYLSATQIEPFIANTSFPYLLTQQGTKVLLPGQTDIKYVFLQGHALDIESAKFELRLPASKTQLKEIPAPDAAP*
P52013CM_10043979	F072991	N/A	MEHKHSTAMKKIILTFITGIGLLTPAMAQIPTIDVSSLQQLYAQYRTMEQQLDTSKNILGKATQIYDQEVKTYQTALGNIDMVKNKVQSWINSFSRLSSTDFFSGRASPIQNFDRNVTYWANQMAYGQRDVTAMERRWETALTRVNTGTATDWERRVALGGYNSKLIENANASRDYGSNVLAESQSVISDTQQGTLIEQAGAQNALLYQQTALLDKMKNDVNDATVAEAAHREQQLQAERNAAVIRRAMSNIPVD*