Scaffold P52013CM

Basic Information
Taxon OID	3300003465 Open in IMG/M
Scaffold ID	P52013CM_1003175 Open in IMG/M
Source Dataset Name	Ore pile and mine drainage contaminated soil microbial communities from Mina do Sossego, Brazil - P5 sample
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Campinas
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300003465 Open in IMG/M

Scaffold ID

P52013CM_1003175 Open in IMG/M

Source Dataset Name

Ore pile and mine drainage contaminated soil microbial communities from Mina do Sossego, Brazil - P5 sample

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

University of Campinas

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	31914
Total Scaffold Genes	37 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	18 (48.65%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

31914

Total Scaffold Genes

37 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

18 (48.65%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (75.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Mine Drainage → Ore Pile And Mine Drainage Contaminated Soil → Ore Pile And Mine Drainage Contaminated Soil Microbial Communities From Mina Do Sossego, Brazil, In A Copper Mine

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Mine Drainage → Ore Pile And Mine Drainage Contaminated Soil → Ore Pile And Mine Drainage Contaminated Soil Microbial Communities From Mina Do Sossego, Brazil, In A Copper Mine

Source Dataset Sampling Location
Location Name	Mina do Sossego, Brazil
Coordinates	Lat. (^o)	-6.426389	Long. (^o)	-50.051389	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Mina do Sossego, Brazil

Coordinates

Lat. (^o)

-6.426389

Long. (^o)

-50.051389

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F035367	Metagenome	172	Y
F038201	Metagenome / Metatranscriptome	166	N
F045645	Metagenome	152	N
F063304	Metagenome	129	N

Sequences

Protein ID	Family	RBS	Sequence
P52013CM_100317533	F038201	N/A	MNQLDSPAVETASRSAARSNRMDVFTRNVQFMVSQVAGEHAGQTFQMLQRTFPGLRNFEQLRTFAKLYVNSGLNPLQLRPLPSDVDPHRLKGELALRFCGGIIVLAKDERIVCRGAEAYGPFDPMQAASFSRKLSAESPTNDDRGHALDPEQCVPSPVGVYPEIA*
P52013CM_100317534	F045645	AGG	MKLQETALRMLKSVAGVFHVRPIIPDGVLALRKGRRGHELVQNEGEAVRVVAVSDDKPGLLSFAAINGIPVKNYTDMAVPKPETTSKDAAQVPELSM*
P52013CM_100317535	F063304	AGGA	VPVSGRDLVFRGAGLARSYNGVMRISSPPGGAAQSPHIYNLLDQRLSKQGVVLHQLMTDYAAAVTTQPTSPEELLEQMTSVFGKWSTNPALRVVPETPLAEEHLRLMDDICQVQGPEAAARLESTLVRVITNQFARSLGSPLRLPDENKLIPLTEVKPANAYSALAQRAALLGLQPHERVKEWVQSNRESYQHKPTSDVGYLRQAQKFCGAWPAESDQTDPFQKCVATFLDGVALATNRNHTVVVQSSLVDTFARSIRRQVRELGLDRPAMPATAISMA*
P52013CM_100317536	F035367	GGA	MLNAVLSGFFGLGVAAVHFFWLEYAIVRWPRVHYTEDYQTAFAVVCAAVVFVLTTLRQISTCLASKTLRPGEIGFILVFVVIVMVGMTPVPGSNFPAYIYERNSAGKKQPNAAAIKHEEPAPLHLKQSFP*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold P52013CM_1003175

Overview

Ecosystem & Geography

Associated Families

Sequences