Scaffold P52013CM_1002911

Overview

Basic Information

• Taxon OID: 3300003465
• Scaffold ID: P52013CM_1002911
• Source Dataset Name: Ore pile and mine drainage contaminated soil microbial communities from Mina do Sossego, Brazil - P5 sample
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Campinas
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 53176
• Total Scaffold Genes: 53
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (28.30%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (22.22%)
• Associated Families: 9

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium SCN 57-15 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Mine Drainage → Ore Pile And Mine Drainage Contaminated Soil → Ore Pile And Mine Drainage Contaminated Soil Microbial Communities From Mina Do Sossego, Brazil, In A Copper Mine

Source Dataset Sampling Location

• Location Name: Mina do Sossego, Brazil
• Coordinates
  • Lat. (^o): -6.426389
  • Long. (^o): -50.051389

Associated Families

Family	Category	Number of Sequences	3D Structure?
F038792	Metagenome	165	N
F045301	Metagenome	153	N
F049187	Metagenome / Metatranscriptome	147	N
F051331	Metagenome	144	N
F061478	Metagenome	131	N
F063031	Metagenome / Metatranscriptome	130	N
F063287	Metagenome	129	N
F094220	Metagenome	106	N
F103684	Metagenome	101	N

Sequences

Protein ID	Family	RBS	Sequence
P52013CM_100291117	F094220	N/A	MITSDTILRLACLIPEHNLKEIQSLPDFNTWGVDSQPGRLPSILYVGEGSRDFGPPCWPFMAAHEGLHSIATHFLEADDYRFILYNICEDWRINLCLRGIFHDKIEKSFKEARQVILRRWEKNPLKLTSPISQALQHLCYLNHLSERKPNASVPPGYLQELLWIRDQFGSAENWPLVPTNPDRLARDQENARISGRLIKLILQHQMPPHINPAEIRELIIRMGYDLSFRLNLAAPQVLDEQPTIQCATNHLEE*
P52013CM_100291118	F103684	N/A	MGISVVIAAALILFIWLPPAPTTPTSQQLKAAYNKAAQRLYRHEILSLYHPPEEAFTPHGLQLLHQIQSLYSPVFVPYLVMGSVPVQPDVLYNPWFDLFILVEDSEGQINSVVLASSRGSDQAAQLTMRENFWQEVYRRYQVAQMASFSSPKPFEETDRVILELRNLTNRFGWPTQVQLSDARVPFDLYLQRPTQAIYCTPTEPGTYVVFNYHDHRLHTNVVALPPYGVRDVEKLVEESLQGSTRRTARALN*
P52013CM_10029112	F045301	N/A	MHCRIIPYNRKINAPIRFLYYLEVFDLFVIMVIGFLGPLGISSFMPVNIPIWHIALWLVALTMTLILIKIGRAPGFIQHWLTQVFRPRSYHPGKRRQSHFLIIEAVYRGEVESAKNPEQPFSPEELEQIRANVCRLRQNRREADLLSSNLQF*
P52013CM_100291120	F061478	AGGA	MQVFHQIRVGRFRLYNVAARDAVGLVTEAWKRGSLGKTFLVRPLTNQLIGEEVIDGSGRVIAVFGLAVTNAFRPDPKVQEDYREKLRAVLNEL*
P52013CM_100291121	F051331	N/A	MKTLICLAVLLAAPIVRAEPVKLWDGKKRGVDLVAIGHKRVTVYLADGRTTVVGIPILVEKPKTATPVGKPAPATHNHDHHAPQKP*
P52013CM_100291123	F038792	AGGA	MNTPSRKQFIELIACFNLATEATKETLASEYDHRTQQDAAAQRPITPMLLFCMELAGTPARAEAIFYHVLKTSRISYWPLPELAPHLRANQEIKAICFKHFLVPIKASETLLVLCGCNQYDGEGPTAIWQKLASRKPPFPIVVLSEPERIRKALLQFA*
P52013CM_100291127	F063031	N/A	MNPRNLKLPVIIDLQPEPAAPILRLPGWMKYLFVLLYVCTLFGMGLLLKEGYAFFKLYQLKVQALRISETTTREIAALNEQLMENRRNQNNYEQFKYRQRTVTRPGPLLGWLPSLVGRAQRAHYITLQQANDRVNVRLALEKAIADGVVQNPAPPSEYQIIQAGEETPKYQELPANQRPNPKNEYTAFAMQLKKQ*
P52013CM_100291128	F049187	N/A	MKSNAIRAQLAAVAAILFLALVAIAPWVAGSHILKPLSGKWGRIIRHKDELLAEKAGLQSKLGEFQNMPEKQKANEIFQRNIDQTGLDSIQGLINNGKYSIYSFRTVQLDSKETSFSFVAQYNTLGQLLTDLWNTFQFVELSSLVMKPSPNKPDEDVVATLTVRLPQMQNR*
P52013CM_100291145	F063287	N/A	MIRALPQQRNRVIVSNAARNQQFLGVNWHGTLTRPSFALVRIQTGEKPMPVQGYDLLGHEGRHAAYGDRKLLRHAMDSGIDQANELLFPSLVPTMGAGLLALWLVRKSGEQLTYADTLKIKELILEQPDLLKDWCEVESDQFNPENKSYRVIAEPAPEVLKRLLKAATQN*