Scaffold P52013CM_1002743

Overview

Basic Information

• Taxon OID: 3300003465
• Scaffold ID: P52013CM_1002743
• Source Dataset Name: Ore pile and mine drainage contaminated soil microbial communities from Mina do Sossego, Brazil - P5 sample
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Campinas
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 244379
• Total Scaffold Genes: 249
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 182 (73.09%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (100.00%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Mine Drainage → Ore Pile And Mine Drainage Contaminated Soil → Ore Pile And Mine Drainage Contaminated Soil Microbial Communities From Mina Do Sossego, Brazil, In A Copper Mine

Source Dataset Sampling Location

• Location Name: Mina do Sossego, Brazil
• Coordinates
  • Lat. (^o): -6.426389
  • Long. (^o): -50.051389

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007854	Metagenome / Metatranscriptome	343	Y
F013999	Metagenome / Metatranscriptome	266	Y
F016649	Metagenome / Metatranscriptome	245	Y
F017625	Metagenome / Metatranscriptome	239	Y
F018762	Metagenome	233	Y
F055579	Metagenome / Metatranscriptome	138	Y

Sequences

Protein ID	Family	RBS	Sequence
P52013CM_100274364	F055579	GGAGG	MSNDAYTHYVVLNETILGEARIIEKCNEWISLAFVRLGTGSSKPFNDYAFVENRTLVPKVTN*
P52013CM_100274370	F007854	GGAG	MNTLIANQYGRVQGEVGGTGLALAVAAQTPRRESVELHTRVDSVEQLLHLLAIMRAVERRIEHFQLRDAKKPESGEQEDPFDDTICSEGDLFSSNGNQSKNKIYGRFAQFLVYEQVDQGRLRVFFAVRDEAKRVARFDLHPGEAQAFHALARRALFGAGQVDLLLRDELSLSVSVNVSGHGVRFDVQTPIWRSQFAIPNANELATLAVFTRRAVNQERTAPIVYGGAANQLRLRKRSDGQVIAEFEHQGTAEKIVLSTLQLYELEILAQYALHRAFEPVSVAIGTGQPHESVTAAQIA*
P52013CM_100274381	F018762	AGGAG	MRHLPKKLAYAGVLLASLFLVPLTAHAIFGTMPVIDWTAVARLGEQIGLSRDTLNTLGLYVQQYNRINAGVQEGVALARGRQLRGVLNQVVGSEFPEFQELQQNFRNVLVDPATIRHDIENAYGVTSGNFPIGRKKRIDAADATATLGLFDAARMELVSEQEELDANEIEERAAVASPGGAAKLSAAANGAVLRSQAYNQRLLARLLRLHALSIARENSIEKEQEQIRQDQVNAVSNMIGSMQLSYGIGDRVGR*
P52013CM_100274384	F013999	AGGAGG	MSRILNRGRTVARYFWRSLGSLVMTLTLGSPAFAQVGGDRVSGFLSNSLSYAQGLGIFAAGFLVIWAVANVSRERPSGKQWAGAGGSLLLSSLLQLLRTFAG*
P52013CM_100274388	F017625	AGGCGG	MRKREQNEFDQEEFFGFAKSYLSEAFPNPQRIGCPADSDLTRMAEHPVEERDAGVSTHLTRCSPCFKRYMEILAALKQQSR*
P52013CM_100274391	F016649	GGAG	MRDKYLSLCLLVSLVILPAIGCKWISRPNVSGVWKGSIEASESGGKNKWQGPAELTLNQNGDAITGTLSFTHPQGGRVQVPISSGVVSQDAVTFSGQQQFPLGGSVEVTFHGKVSGTSLTGTTDMTSRGLFGTVTNSGPLNLTKQ*