Scaffold DC07A_1020326

Overview

Basic Information

• Taxon OID: 3300003450
• Scaffold ID: DC07A_1020326
• Source Dataset Name: Marine sediment microbial communities from Douglas Channel, Canada, that are oil-degrading - Sample S7-DC07A
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 500
• Total Scaffold Genes: 1
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine Sediment → Marine Sediment Microbial Communities From Douglas Channel, Canada, That Are Oil-Degrading

Source Dataset Sampling Location

• Location Name: Douglas Channel, British Columbia, Canada
• Coordinates
  • Lat. (^o): 53.6667
  • Long. (^o): -129.1333

Associated Families

Family	Category	Number of Sequences	3D Structure?
F040632	Metagenome / Metatranscriptome	161	Y

Sequences

Protein ID	Family	RBS	Sequence
DC07A_10203261	F040632	N/A	MSHRTRGAANYEIELEDLRDAAALPDTVHVVVASREEELLWAVFDGFSELPTVRVTGCSTLPQTRQICAADPPGYLIIDMTLLDHEPMDLITLANLSNCETHIVALTDHPVFEIGARFGKARLTFLQKPVSAHDLLLLLRLRISEHDECEAKVC*