Scaffold SC02C_1152758

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold SC02C_1152758

Scaffold SC02C_1152758

Overview

Basic Information
Taxon OID	3300003448 Open in IMG/M
Scaffold ID	SC02C_1152758 Open in IMG/M
Source Dataset Name	Marine sediment microbial communities from Douglas Channel, Canada, that are oil-degrading - Sample S15-SC02C
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	567
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine Sediment → Marine Sediment Microbial Communities From Douglas Channel, Canada, That Are Oil-Degrading

Source Dataset Sampling Location
Location Name	Douglas Channel, British Columbia, Canada
Coordinates	Lat. (^o)	53.6667	Long. (^o)	-129.1333	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F073539	Metagenome	120	N

Sequences

Protein ID	Family	RBS	Sequence
SC02C_11527582	F073539	GAG	MNATQDASNDAQNKINRQLIDYNSTQNDLIFKTRKRLFKLEHNFRLLIAGLFITVSTTLF

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