Scaffold JGI25913J50563_1005168

Overview

Basic Information

• Taxon OID: 3300003431
• Scaffold ID: JGI25913J50563_1005168
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MLB.SN
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2471
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011223	Metagenome	293	Y
F014133	Metagenome	265	Y
F104718	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
JGI25913J50563_10051681	F014133	GAG	MNHLKNVWAWLKDHYTMPTPAELIAEELIQAQRTKLRHQSSMEYHTALVAYNVARIKRLKALTTKTEVVE*
JGI25913J50563_10051682	F011223	GGAG	MSKIKIQLVEDEETPTPFEMMWDYLMVFAKCVGVFAAICFAIGYFSDTKAQTTQCEPSKTVLTKSIFK*
JGI25913J50563_10051684	F104718	GGTGG	MSESMQKDIDAIVAMMAPPPSSTGLLTARDVQDIVRRAASKGALVGWLAAEKDVKERAGRALAQLEYENQCNKDRIKELELEIIGLQQ*