Scaffold JGI25913J50563_1002166

Overview

Basic Information

• Taxon OID: 3300003431
• Scaffold ID: JGI25913J50563_1002166
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MLB.SN
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3906
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (81.82%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015970	Metagenome / Metatranscriptome	250	Y
F042184	Metagenome	158	Y
F043818	Metagenome / Metatranscriptome	155	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI25913J50563_100216610	F015970	AGGAG	VTASNKALWEAYQELNDDDIMDAIQGSVAIPLAIKSGDWEYAQYFIKERIENKMQRRAELALYESIKTPSIDADDELRTLRTLWLKKNFKGDKDET*
JGI25913J50563_100216611	F042184	N/A	DIELYDVVIDIKTWVEWEFDPEYSPNDGVYNKFNWVAYLQVGNQRIDITDELCSKGSKKIEKQIEEFSRDSI*
JGI25913J50563_10021669	F043818	AGGAG	MRLKHTIAAILEENQDELFCPFCTKPKGDEIDCCDQSGNWFRLRYFDFDTQFAIAQTIFNLQKGVPDKKTN*