Scaffold JGI25913J50563_1001439

Overview

Basic Information

• Taxon OID: 3300003431
• Scaffold ID: JGI25913J50563_1001439
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MLB.SN
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4825
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (78.57%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F027776	Metagenome	193	Y
F056414	Metagenome	137	Y
F079788	Metagenome	115	Y
F098688	Metagenome	103	N

Sequences

Protein ID	Family	RBS	Sequence
JGI25913J50563_100143911	F098688	AGGAG	MSKRDLALDSLTRICEIQQRLINQLIAMEQTSYARGYEDGMAAQAEVDIALNEIASGEPK
JGI25913J50563_10014397	F056414	GGAG	MKLTNYQRSQLKAAACFGCSQIDKVAASLQRENPEAFLRESELAYRDFYHQPMAAHRSYVERFLPRRKSEYSQEQRQIMEQNHYLTTTYQIGVGA*
JGI25913J50563_10014398	F027776	GGTGG	MKNPLEIEIKKTVFAHLPAVGDFGVIDRGDLATILHSACTEVALAGWARGADFVQRRLDQELEILRKELKSAQIELDYAKAN*
JGI25913J50563_10014399	F079788	GGAG	MDDDDIDSWATIALGLIASVFFFIGLVSVVAAACMAWGYYTYEPICGSIAALFTQECK*