Scaffold JGI25913J50563_1001094

Overview

Basic Information

• Taxon OID: 3300003431
• Scaffold ID: JGI25913J50563_1001094
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MLB.SN
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5481
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (80.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001059	Metagenome / Metatranscriptome	790	Y
F004695	Metagenome	427	Y
F006264	Metagenome / Metatranscriptome	377	Y
F015330	Metagenome / Metatranscriptome	255	Y
F103134	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI25913J50563_10010941	F004695	AGGA	MLDKQNIIVESLESPPANKGLEYQVAHEAYLKMVDYLRLTQAKNTLNRLSDYHYLNIPVSNSTEPIRGIDYISPVVSPGIDYSTDVITKCLMPDGKVNFEFERISENDAIASQQAEKMVTYFINSKNDSYQIIRDLAQDSLLHKNGVVMISPIREPITQYKEVEGTRDNLRSFEIMAAEKGLVAKRQQMRRIDVDLQGVAQETMMPDEQGQEPTADDMQEAIRNNTIYRAKYKLTGFSTNIRIKHVAQHYFVCNPTIPGIQNQDFCGFYMPMTIHEAKSQYPYIDLEKFADHAAYGPAGAYQAGALENDLALHARDSTPVPGQGVIASAGADRYSRVVMLTTAWLRKDVDNDGEEEIIEVCYSGSYVLYIKEVDFIPMASMCPKPIVGNFFGYSQAERLVPLQEYKTAINRAEIAFALQASTPRMGVNPEFIDAEEIQRGVSALFILDRKFDPAKHVFEFQPLQGNLAYIQDSMERFEKDNNRMLGMTSAADTLNPEVMKDGNSGYKLQLAMGPNQIIQDAMVKNCAIGLRDIIYIVWKTMIQYADDYNIQQLADAMSPGQPFLDAKAMENFDFIDRK
JGI25913J50563_10010943	F006264	N/A	MEDFSALFKQRLSGQAEVCARKSLEWLQKDLQGEYKLLPSEVYYLASAANILLNIRDTYGKK*
JGI25913J50563_10010944	F001059	AGGA	MATYDIEALKADLPTAKDLAQFVYDKTQIALDLVGKSKDDQYQVAKNALEGKKIPSEFVTQENPYVDKKDLIPVDELKVLPPRNKDLPEPDTQVHYFGATNMPHPLDPQSDKKVAIDFRKYENGLITYQVVAPVEQIAVGSRINKYGQTVPEKYTWLDPRTEELLMRRADGTFTERGRGLYTYLIGEKGGGVWTLIDRDMVSVSAKNIADPWA*
JGI25913J50563_10010946	F103134	GAGG	MYGTVISGGKQMSKGLTKGINDKLSGFEDENKRRATIATAVNNAFTVRHLSDQTTNNSNNGKFQTVKEKAKVNP*
JGI25913J50563_10010949	F015330	AGGA	MSDEKVVELKTKNPVGRPKSVVNRVTEYGALFNQLNAAHIAKGLPPLKTAMEVLIEAMQSDELDIKDKARIADKLAPFESSRAPVISIEHVQNIVREEEVSADDAMDDFLDSLRKV*