Scaffold JGI25921J50272_10037949

Overview

Basic Information

• Taxon OID: 3300003430
• Scaffold ID: JGI25921J50272_10037949
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.SD
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1152
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F032264	Metagenome	180	Y
F037206	Metagenome	168	Y
F045069	Metagenome	153	N
F081291	Metagenome / Metatranscriptome	114	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI25921J50272_100379492	F045069	GGAGG	MRYLLLLLAAPALAAEPAYLTYDDVHVQTVLTQDRPSWCYGMKMAFDIDGLNRAYYGCWAGSQGFVHIEMLDGSKRVIPMAKFSKPKEATK*
JGI25921J50272_100379493	F032264	AGGAGG	MTDFTKYETQREILIDYLHVMIARSDWHGVSDVANDLRELEAEQREKN*
JGI25921J50272_100379494	F081291	GGAGG	VKRIDYWKAKLPGARAEERIRQKELNQMARAFERAVEKVAEIEQRIEDEKDKLAKIK*
JGI25921J50272_100379496	F037206	GGGGG	VKCQHCGSKTYVVNTAQQPGGIRRQRKCDSCKNNAYSAEVWVAGNVQVGKSIYTNDEVALIKKKGVDARRAN