Scaffold JGI25921J50272_10026872

Overview

Basic Information

• Taxon OID: 3300003430
• Scaffold ID: JGI25921J50272_10026872
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.SD
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1471
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000441	Metagenome / Metatranscriptome	1136	Y
F001019	Metagenome / Metatranscriptome	804	Y
F001781	Metagenome / Metatranscriptome	635	Y
F004666	Metagenome / Metatranscriptome	428	Y
F034924	Metagenome / Metatranscriptome	173	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI25921J50272_100268722	F001781	GGAG	MKPQDKDKLNECLSILDTTDLGLSLVWLWTWSTIKNFMGDETFIMKKTEDEMWDCLCEAVEAGHGFSLEYGAEQHHXDVMEWMLNRDYMVDSMFEDEEDEDEDE*
JGI25921J50272_100268723	F000441	AGGAGG	MKMSDAYINDQLNKAQQLLWGGSETENIEAHNIIAKLIKDRIEQVGDRG*
JGI25921J50272_100268724	F001019	AGG	MTHYGASLEILEVAYDVSPGGVRTFEVYDKGDNYDIMDMPIYETESLTKAVEYCYNLDKDFIVRTYAEWEMREMLADL*
JGI25921J50272_100268725	F034924	GAGG	LPTYRVFGTKYVNYYTIVSAADEYQAAEIANSRPTIDWEIVPIDDEIEATDVYLDDDTSIDLQLNM*
JGI25921J50272_100268726	F004666	AGGAG	MATKREYLKSKGITVGARGRFSAAAKQALTEAQSQGVTFEAEKPTPKK*