Scaffold JGI25921J50272_10008817

Overview

Basic Information

• Taxon OID: 3300003430
• Scaffold ID: JGI25921J50272_10008817
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.SD
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3035
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (10.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002303	Metagenome / Metatranscriptome	573	Y
F007751	Metagenome / Metatranscriptome	345	Y
F029655	Metagenome	187	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI25921J50272_100088174	F002303	N/A	MDIREQNRERAIEFAKEWGYENVSNHILDIMVSIMCTRDKSSYAGGGFVEAVVANNLYLAMSRADTDCRNNIFLLTMCKANCYV*
JGI25921J50272_100088178	F007751	N/A	MNIVTIIAPNTQSADLKSVIGKDVSQNQSPTCRARLVSVGKSNCIFESVPSPYDKFPKPEFVGVKYKVPNWIAWNSFFY*
JGI25921J50272_100088179	F029655	GAG	MNKLVFKINEKACVAFLKKYPLVCNLMENSNGKDLLSAYKKFLKLKDINEPKLGGRGESIGSVSFGTKTFYKYDWDTCSGWAEVFEYYKSKK*