Scaffold JGI25921J50272_10005436

Overview

Basic Information

• Taxon OID: 3300003430
• Scaffold ID: JGI25921J50272_10005436
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.SD
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3988
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (21.43%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009960	Metagenome	310	Y
F021979	Metagenome	216	Y
F050949	Metagenome	144	N
F067472	Metagenome / Metatranscriptome	125	Y
F067745	Metagenome / Metatranscriptome	125	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI25921J50272_1000543610	F021979	N/A	MLTIENINIINSKFAGTPEWRIGEMFIGEENYIFVIHKRVGYWTIGGSKHDELTVRLHRVKTIGGYVMETGLVKQNYYRRSAWDIEYMRTISSFTFCLDTHIKNVIK*
JGI25921J50272_100054363	F067745	N/A	MSITLDSGHLTMKGNGKVQIKTSIQIYGTGTKMPVTVEADFTNIPHHLHQIYYQSLISQYNTSVNVYNNTKDDEPKTIREKKSEWRLNRIVDIISKAISK*
JGI25921J50272_100054365	F009960	GGA	MLTIENIDKINGYALEVKGNGYYFKGWDNTTNDVATFALAGVSTSNPLIRITLHKKGNVVFDDIQNRDCYVYGIAVDGLTFYFTKEKLNTPAEFRNTIEQILNGI*
JGI25921J50272_100054366	F067472	GGA	MLTIENIQNIDGKEFQLSSGRKFIIGIARAYYDHYSFGVFPLMENNVASIKDGIVYKLMRHIRNRRGYEMTSAKLKQNVYVTPENLTMKNFILELHIQTGMIYAHNRK*
JGI25921J50272_100054367	F050949	GGA	MLTIENRGRLISXSFYDXMGMYWVVDKIIDDTXEYLILIENRKGPKEIFAXNKQNXXGIGYEFGISAGGPGMQRMYKVKTYIPIETIXDKILLVNRMQDLINDTYDI*