Scaffold JGI25921J50272_10004424

Overview

Basic Information

• Taxon OID: 3300003430
• Scaffold ID: JGI25921J50272_10004424
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.SD
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4453
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (8.33%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 7

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001018	Metagenome / Metatranscriptome	804	Y
F002738	Metagenome / Metatranscriptome	533	Y
F006619	Metagenome / Metatranscriptome	368	Y
F008128	Metagenome / Metatranscriptome	338	Y
F022401	Metagenome	214	Y
F025982	Metagenome / Metatranscriptome	199	Y
F044444	Metagenome / Metatranscriptome	154	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI25921J50272_1000442411	F044444	N/A	MKEAIIEVSDDILEYARQLATQPLMTKPTRYDLDLPEDTHWELVKLAAELKMHHEDYALNVLIGHVESELDRKVQA*
JGI25921J50272_1000442412	F006619	N/A	GSYQRQLSNVSDFASEIQGFKPWCIHLTWFNKYRELLCKRTEARNASPSGTPEKCVAWWYAPPADHISDGRFVLLYTNSGAQAPLSHWRTYKPKEIFTQHDAWDLFFNMMEAGYVPFPGTALPQLKSAIKK*
JGI25921J50272_100044243	F022401	N/A	MDTTQEPIDSVKSWQDWYRKHRIVAQTDKPLEAKDLRENMHDTTNAVETLIDTDPKAMWIKKAREHFADTLAEYQYELSGKDFYKAFYQAAVEAMGYSEKEYQRTKELVDMLRYHHLGQD
JGI25921J50272_100044245	F008128	N/A	MKTVPVPRLTLSFEVDIEVEYNSFGGKTADEIAEALQDELHNLVFELDQVIGMDSHCTSIAPYNQHDEL*
JGI25921J50272_100044247	F025982	N/A	MSCHDHAIKDFDLQLEMNGLQLDMLKENGEVIPYHLDEHSDLEEKKLKLLVGKRFHQNSSNAYWYYLQREKSAK*
JGI25921J50272_100044248	F001018	N/A	MTQITQAKLKDLTVIKLYEHYNALEKSLPLLTPESQELAKAELESCANLRSEKIDRIYYAMASHEDALERIKKEGDLITQSKRHHESQLRSLKGLLNYLRRVLPLDSNKITGRNYQFTLVKKKELTVEVSSDPEFWHTTERELYCVEETITTTKRVVLRSMSGEVLDERTEPKTTTKVLPNLDAIRSAYQEGRQLPHGVKVVQEYSVRSKRIFGEPRVEMVSSEYPGELLPEDSSAD*
JGI25921J50272_100044249	F002738	N/A	MSIDTYGLSSEQYTEFFHKNIRAAAKLYLDTCNILSSEGVGNVDFKTVSEMYQEAVYTTNDDCRRYQKSNNPEALKDTDPLGIYPSREELLAEIQAVNTKVEALNDYVAELVAVTTKGLTGIADRLVD*