Scaffold JGI25921J50272_10003359

Overview

Basic Information

• Taxon OID: 3300003430
• Scaffold ID: JGI25921J50272_10003359
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.SD
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5149
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (41.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009005	Metagenome / Metatranscriptome	324	Y
F054034	Metagenome	140	N
F093404	Metagenome / Metatranscriptome	106	N

Sequences

Protein ID	Family	RBS	Sequence
JGI25921J50272_100033591	F009005	AGG	MEYTPDDYNEFREAELLSLAARVGMDEELLSYAKQIQRQLGSEGDEAHWVDCLEMAYNELITNRL*
JGI25921J50272_100033592	F093404	N/A	MSEQVAYNKCPHSIVELFENPAGEYYPVVQRIDTPSLIRGEYIPIGSRLQYPTKWGRKKGATILLEHKIKDKQKQLRRPKLN*
JGI25921J50272_100033598	F054034	N/A	MLTIRTFKKLEGLVLMDGLNVESIFEFNERYSIWLSDGTNIEIDREPHWKSSTVTYYKMYIAGGTSAMTEFIMIGTINTLDRMKKHLIYIHDKYKIPF*