NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI25921J50272_10003051

Scaffold JGI25921J50272_10003051


Overview

Basic Information
Taxon OID3300003430 Open in IMG/M
Scaffold IDJGI25921J50272_10003051 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.SD
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5449
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)15 (93.75%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameLake Michigan, USA
CoordinatesLat. (o)43.1998Long. (o)-86.5698Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000311Metagenome / Metatranscriptome1326Y
F000868Metagenome / Metatranscriptome853Y
F000980Metagenome / Metatranscriptome814Y
F001043Metagenome / Metatranscriptome794Y
F036238Metagenome170Y

Sequences

Protein IDFamilyRBSSequence
JGI25921J50272_100030511F000980AGCAGGMDLTCRCGTSCTLLSVEDATIPYTDTPLTKEETMEETTISSDALHSPAVEYNANQLVTYKIIHGYSDPEYTTAKVSSIEWDLHNARQNSKHNAVLQGKIDTVKDIITEAYADSDDQDTLRAIAEALSIELIREVLFTATLEVSGTYTYNILENDYDFDLDGEVTDALYADSQNGNIEINETEVCHVREA*
JGI25921J50272_100030513F000311GAGMYFELTAPDRLSMERAYWDAQITGLDPVAMTPLTFNIGTGSIEKVSRIRDKYNLIESYTSDYEPTEIYNRR*
JGI25921J50272_100030514F001043AGGAGMSDYRDGFEDGYKFAREEIMEKLSEIDIADIDSWILDRLSEMIEGGAL*
JGI25921J50272_100030516F036238GGCGGMGDRANFGFKQSNDETIVLYGHWAGHDMLGNLASAVETARPRWTDESYATRIVISNLVGDNWHELTGWGLTVNNILDNEHKIPVIDWRTQTFSLHEEASWDEDTKVRGMQDEPMFTMTLDSFINKYSKVNA*
JGI25921J50272_100030518F000868GGAGGMSSFLENENQMVIDATYAEIGEMLVEDWVNSNLDEGQLFADYRFAEMADNNYLKGRFNLFYDLNPGDQYYLECEEEC*
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