Scaffold JGI25921J50272_10002630

Overview

Basic Information

• Taxon OID: 3300003430
• Scaffold ID: JGI25921J50272_10002630
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.SD
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5922
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (31.58%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F053990	Metagenome / Metatranscriptome	140	Y
F073458	Metagenome / Metatranscriptome	120	Y
F085684	Metagenome / Metatranscriptome	111	Y
F093764	Metagenome / Metatranscriptome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI25921J50272_1000263014	F085684	N/A	MTQIYAYSEIENAYNILMNVVKRENKLHMMDMTILQFHLDELEDEILPMLEQIAFYDPTP
JGI25921J50272_100026303	F093764	N/A	MARRNKSASRQMVESLKDQLTEYFRENVFDDYDYEDLTGSELFEALVETFKELENDLKEELKPIQYVLNKLDPEDYSDSQVLHG*
JGI25921J50272_100026304	F073458	N/A	MSAKLIALATEIVDVNPAGAQLIVNITKAETGAELVEALDNYDSTVLENYSEPVEAEYDEDETLADVDETVVPV*
JGI25921J50272_100026305	F053990	GGAGG	MLDTCVLHDDYEDFAQKYLGVDYEDFIGLQLGLPDEDEIEIEYPVGV*